YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8028-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIITSAFFS SMSFAGLFSG SLFQRFGMRQ VGVTGGILYF LGTGMQLFAT STLHLIMAFS  60
   61 VVQGFAFGLM VPTCYTTFNH YFVKNRVMWM SFAQTLIGLG SMLYPIVMQK LMSWYGFRGC 120
  121 LLILTGLNAH AVFGMLVMHP VEWHMRRVPI QPEEQEELKE LSPTVVIRVQ PETPLKATRE 180
  181 EPNFHTADPG ARKLSHAEEQ MLKVLSSRAS SITSLGNWSG PVVVSDASPQ MMHSLQTSRR 240
  241 PSTIAGASGA VAPAHATKKS WVRTIVDFLD LTLLKKPIFV NIVLGITFAL YSDITFFTMQ 300
  301 PVYLFELGYS RPDTATIIAI GAAADLASRI FLAITAVCIQ VPSRYIYLAG AVFTVFARFG 360
  361 RRTLPWAPRT PFLPLISLIF PQPSTESHSL WAWPASRRSL DFCAPGSTFH CLWSLPTTCP 420
  421 RKGSPLAMAF SCSSKAMPCS SSVPLLGLFG TRPGITFSSF TS

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.46
Transmembrane Helix	7	26	0.74
Cytoplasmic	27	30	0.55
Transmembrane Helix	31	50	0.70
Non-Cytoplasmic	51	54	0.47
Transmembrane Helix	55	78	0.81
Cytoplasmic	79	86	0.77
Transmembrane Helix	87	108	0.90
Non-Cytoplasmic	109	114	0.85
Transmembrane Helix	115	137	0.91
Cytoplasmic	138	277	0.91
Transmembrane Helix	278	297	0.90
Non-Cytoplasmic	298	314	0.78
Transmembrane Helix	315	348	0.63
Cytoplasmic	349	462	0.45