YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Hs3st-B-PA, FBpp...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDTAATSAQ PAMIVMSIWC SSLSLSSRSL AIALVICVTL VYFSYSFNAC LLASISRSLQ  60
   61 QSNLRNLLAL TSSPRNETNN AANSSSSNSS SSRNSSSTTG APPAQTVTSS LDGAPKYQLL 120
  121 RQQGLRPSRH LPDTLIIGVK KSGTRALLEF IRLHPDVRAA GSEVHFFDRH YQRGLRWYRH 180
  181 HMPYTIEGQI TMEKTPSYFV TKEVPQRVYH MNPATKLLIV VRDPVTRAIS DYTQAASKKA 240
  241 DMKLFEQLAF VNGSYSVVDT NWGPVKIGVY ARYLERWLLY FPLSQLLFIS GERLIMDPAY 300
  301 EIGRVQDFLG LKRVVTEKHF YFNATKGFPC LFKSEARSTP HCLGKTKGRN HPHIDPGAIE 360
  361 RLREFYRPFN NKFYQLTGIN FAWP

Type	Start	End	Confidence
Cytoplasmic	1	30	0.47
Transmembrane Helix	31	53	0.62
Non-Cytoplasmic	54	384	0.95