YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG14196-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.44
Transmembrane Helix	39	60	0.81
Cytoplasmic	61	110	0.57
Transmembrane Helix	111	129	0.94
Non-Cytoplasmic	130	137	0.68
Transmembrane Helix	138	162	0.87
Cytoplasmic	163	169	0.95
Transmembrane Helix	170	192	0.88
Non-Cytoplasmic	193	199	0.64
Transmembrane Helix	200	218	0.94
Cytoplasmic	219	408	0.99
Transmembrane Helix	409	431	0.81
Non-Cytoplasmic	432	444	0.70
Transmembrane Helix	445	464	0.90
Cytoplasmic	465	475	0.79
Transmembrane Helix	476	494	0.93
Non-Cytoplasmic	495	498	0.74
Transmembrane Helix	499	520	0.84
Cytoplasmic	521	535	0.73
Transmembrane Helix	536	557	0.90
Non-Cytoplasmic	558	564	0.87
Transmembrane Helix	565	586	0.91
Cytoplasmic	587	600	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKVYQDTT RPLPRVSRAR YYNKHDKSDL GDDFVAPDAG WAWIVCVAAG VSNLSIYPCL  60
   61 QQFGFLFRER LSDLGMSSSQ ITAIINANPA VSACTGLLNG PMFRRFTFRQ VAMAGSLLIS 120
  121 GSLILTAFCE TFLSYMVAYA LLFGFGMGIS VSASSLAINT YFQKKRRRAA GFSWTITGLG 180
  181 PIFLPHLVTF LLTIYGVQGT TLLFAAISLH SFVCALIYQP VRYHVKPPVE QLADQEQQAE 240
  241 ALCAHCSWQQ KREPGGIFSS QYLCQDDDAQ RPGYEICEPG TPMLSRANDG WYGSRLSLTS 300
  301 GRLRFRTISS SKDLEQTQRL HCPISEEQNH ESDEFLRPNN FRRERVESNL EAKLCCQCSA 360
  361 KREEHNNNRK EKEAEAEEAG MESAPLHDPQ MSFLAKVVTF FDLDLLRDFT FVNLVAGLTI 420
  421 INFGELNFSI LTPFILVDFG FDTPQITLAM SLLAGLDITM RFMVPFLTEK IPWDNRVFFL 480
  481 IGVVGIALGR TVVACTRSYS LILCSFVWIG LCKGVRTIFW PLIIPGYVPL NRLPGASGLQ 540
  541 LLISGLFTLI GGPFVGLVRD RYDYSVTLHC LNMMSFVAAT SWSLEALIRR HRRKQRLVNS 600
  601