YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx5-PB
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.46
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSAVKPLSK YLQFKSIRIY DSVFTIHSRC TVVILLTCSL LLSARQYFGD PIQCISEEKN  60
   61 IEYIQSYCWT MGTYILKLDD FGDQEQALVS PNQEVSYNSA FFSSATTNAP QSSSRVRTRP 120
  121 HFRSSLRRIG EYNEAYARSL SIAEGVGPEI RGQTERQYLR YYQWVIILLL FQSFVFYFPS 180
  181 CLWKVWEGRR LKQLCSEVGD ALLSEETYNT RLRMLVKYFT TDYEDMHFCY MAKYVFCEVL 240
  241 NFLISVVNII VLEVFLNGFW SKYLRALATI PFYDWDRWNR VSSSVFPKIA KCEVLKFGGS 300
  301 GTANVMDNLC ILPLNILNEK IFVFLWAWFL LMALMSGLNL LCRLAMICSR YLREQMIRSQ 360
  361 LRFMTKRHVK RALRDLTIGD WFLMMKVSVN VNPMLFRDLM QELCELRTSA SGSTLESPV

Type	Start	End	Confidence
Signal Peptide	1	43	0.46
N-region	1	34
H-region	35	40
C-region	41	43
Cleavage Site	43	44
Non-Cytoplasmic	44	160	0.91
Transmembrane Helix	161	183	0.88
Cytoplasmic	184	234	0.89
Transmembrane Helix	235	256	0.81
Non-Cytoplasmic	257	323	0.87
Transmembrane Helix	324	347	0.88
Cytoplasmic	348	419	0.89