YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	bnb-PD, bnb-PA, ...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCQLLFVAT VCLASVWALP VPDEEVAIQP DSGAKAELLT KTVLPTAVEP APLKPEAEKP  60
   61 AETKTIEAKA AVPEQPDVNA NPSPSTPAAE PAKEINSVEL KSSAPDVETA PAIPEKKTLP 120
  121 EEAKPAQENA PVEAEKKQEK TARTEAEPTV EAQPQATKAI EQAPEAPAAN AEVQKQVVDE 180
  181 VKPQEPKIDA KSAEEPAIPA VVAAEKETPV PEQPARQERI NEIEQKDAKK DAAVAEEPAK 240
  241 AAEATPTAAP EAATKSDSNI QVIAPEKKSI ESSPAAAAAS PAAQAAQAKS GEAPKPVDQQ 300
  301 KSTETVAESA PVLKTNAPLA PAGATKVTEA VKEQEKEQPA ADTAAKALPE QKKTEETAAP 360
  361 AGAPEPTAAV APAAVPEAKK IDEAPAAETV VKGEEAIAKP IAQSPSAEPK KSSEEKSDKS 420
  421 ESKVDESSES KESEESSESK EN

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	442	0.99