YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	por-PA, FBpp0302...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	82	0.87
Transmembrane Helix	83	102	0.85
Cytoplasmic	103	115	0.75
Transmembrane Helix	116	150	0.75
Non-Cytoplasmic	151	158	0.57
Transmembrane Helix	159	178	0.75
Cytoplasmic	179	193	0.70
Transmembrane Helix	194	212	0.72
Non-Cytoplasmic	213	222	0.75
Transmembrane Helix	223	244	0.85
Cytoplasmic	245	259	0.85
Transmembrane Helix	260	282	0.90
Non-Cytoplasmic	283	300	0.81
Transmembrane Helix	301	318	0.73
Cytoplasmic	319	382	0.81
Transmembrane Helix	383	400	0.58
Non-Cytoplasmic	401	401	0.35
Transmembrane Helix	402	421	0.38
Cytoplasmic	422	459	0.80
Transmembrane Helix	460	481	0.92
Non-Cytoplasmic	482	504	0.88
Transmembrane Helix	505	524	0.92
Cytoplasmic	525	525	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYQYFEEES DYIDLDEEEE DDDVVTAGSL DHRFGQPNGE EDYYFGGDDV EEELVVDGHG  60
   61 VLELAGRLLE SLQSCVQPSV LQVMQYVAPM LLLCLLCRLL CLLYSQRRRL TSLAPLHLFH 120
  121 FACGLIILQI TVGYRLLLLL LLAAVGYLLL QLLRLGRRGA QVLAVLTVGS QFLYELLIWR 180
  181 RRSDWPQLRG IQMVVNMKLI SLGFDLTASG QLQARIPGPF AYLGYIYSPA TCALGPWVSF 240
  241 GCYMDCLVPR NSWLVSLRRL LPNVVICVLA VTVSNCVAPA LSDFFGDSSH FLVMYWDALS 300
  301 VRSSHYFVGM MAQALLVASD QRLDGATKES DMLGPLISQP WRIEWPRSIS SLVRSWNIPM 360
  361 HEWLKRYIYA PCKPTASTSR GRILVVVLST YLVSSLLHGM DLRIYLVLIS LAFLAEGESL 420
  421 LRRQLASLLN ACITANLCPG KERCRYSHCP SKRRLNSLSY WLARLTNLAF TALAIFHLAY 480
  481 LGVVLLGDDL EVGEDGDSFL WHWQQAGYLS HYIGLGTFVL YLFIS