YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG16700-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	83	0.55
Transmembrane Helix	84	106	0.73
Cytoplasmic	107	148	0.97
Transmembrane Helix	149	169	0.97
Non-Cytoplasmic	170	185	0.86
Transmembrane Helix	186	204	0.94
Cytoplasmic	205	212	0.71
Transmembrane Helix	213	232	0.94
Non-Cytoplasmic	233	250	0.91
Transmembrane Helix	251	271	0.93
Cytoplasmic	272	284	0.91
Transmembrane Helix	285	307	0.91
Non-Cytoplasmic	308	329	0.88
Transmembrane Helix	330	351	0.87
Cytoplasmic	352	368	0.82
Transmembrane Helix	369	387	0.88
Non-Cytoplasmic	388	394	0.59
Transmembrane Helix	395	416	0.89
Cytoplasmic	417	430	0.78
Transmembrane Helix	431	452	0.88
Non-Cytoplasmic	453	468	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAEAPNQLE KNQTATVPRQ ETAEGGSTGE TAVGGAAAKV TKEQDHDAEY HPPTSYLETI  60
   61 VHLFKGNIGP GLFAMGDAFK NGGLLVAPLL TVVIAVVSIH CQHVLVTCSK KMRDLKGDSV 120
  121 CADYAQTVEQ CFENGPSKLR GWSRTMGRLV DIFICVTQLG FCCIYFVFIS TNLKQILQAY 180
  181 DIDMNVHLVM LLAFVPVLLS SLITNLKWLT PVSMFANVCM ILGLAITLYY ALKDGLPEVE 240
  241 ERALWTNGSQ LALFFGTAIF AFEGIALVMP LKNAMRKPHQ FERPLGVLNV GMFLVSVMFM 300
  301 FAGSVGYMKW GEQVGGSLTL NLGDTILAQA VKLMVSAGVL LGYPLQFFVA IQIMWPNAKQ 360
  361 MCGIEGRSLL GELGFRTFMV LVTLAIAEMV PALGLFISLI GALCSTALAL VFPPVIELIS 420
  421 RSELNKGPGI WICVKNLVIL VLALLGFFTG SYESLKQIVK HFGEEEVH