YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0309739, wus-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTTQTVSPV AGKDKTNDTS KGSPSKAKSN GHAQGKTKSK EMNALPPQKS VVIAYLCWLF  60
   61 GGIFGLHHLY LHRDRHAFIW WCTLGGYMGI GWMGELFLIP EYVRDANEDP KFVKMFVAKL 120
  121 QAYPKPPYSS KRFVGQVMIG HLFGQVCSMA IPETLVGGWD LSFLHWTIPL FVSLGVWLVG 180
  181 NIGREQGVWW HCLVAAYLAY PARYLIYDET YSLLLTGLVA ALTFDGLSKQ WRRTPPRRGS 240
  241 PGERTFKLTT AVIIYCAFWG SFLYFNGTIS DEDGGEVPIH EAIHNFLASA WWTDLKQALL 300
  301 DTYNYAQHHG WYETWKEVFE SMDVDGERNS YKVLGVSATA SQAEITAAYR KLSKEYHPDK 360
  361 VKDEGLRAQA HQRFIEIQQA YSVLSKIKSN RRRKNKQYQE EEAIVL

Type	Start	End	Confidence
Cytoplasmic	1	50	0.83
Transmembrane Helix	51	71	0.93
Non-Cytoplasmic	72	76	0.80
Transmembrane Helix	77	99	0.88
Cytoplasmic	100	132	0.83
Transmembrane Helix	133	155	0.73
Non-Cytoplasmic	156	161	0.76
Transmembrane Helix	162	180	0.94
Cytoplasmic	181	186	0.80
Transmembrane Helix	187	206	0.83
Non-Cytoplasmic	207	210	0.78
Transmembrane Helix	211	228	0.91
Cytoplasmic	229	245	0.88
Transmembrane Helix	246	265	0.85
Non-Cytoplasmic	266	406	0.87