YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Axs-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDAKSPGP RTRNIIENQL FRRQRSLKLE ALQRQRTLDS NDGVEGLGAD TEPFDKTHIV  60
   61 IIFTEKAKLR HCQDVEKIIQ EFGIQTTLEI VGKTEKYLYL SASVDTLLRL ADAAELEKMT 120
  121 TTHSMQKFNH GCISDFLLPG MGKEQILRYC EIPVLIKDVI QDGIKSYVQK GYIEDMFPLH 180
  181 DILYLERFNW NLKRTKLPIE DIRNYFGSSI GLYFGFIEFY TKALIFPSLF GILQYVFDLN 240
  241 ISLVCSFYVV WTTIFLELWK RKCAGYSYRW GTIEMSSLDK PRSAYTGQLK PDPITGKMTL 300
  301 HYPMRYTYLQ MYCISYPVVL GCVVAAGWFA LYQFQIEAEV LADFGPDSWL LYVPVIVQSV 360
  361 LIAIFSWAYE KLATFLTNLE NHRTRSQYDR HRVNKLMLFE IVNNFFSQFY IAFVLHDLRQ 420
  421 LKYQLMMQLL VFQLLCIAQE IGIPLLAVLR QKYAEFRHRE VAEEKLRSIS DLPRYEQSFY 480
  481 ESGLDEYHST YEDYLQVCIQ FGFVVLFAAV APFAAIGALL NNVFAVHIDM WKLCNIFKRP 540
  541 FARRAKNIGA WQLAFELLSV MSLLSNCGLL FLQPNVKDFF SHWLPSVPDL SFVIFEHLLL 600
  601 GLKFLIHKVI HERPRWVRIG LLKADFETSQ ALKQLKKFKA EANKMA

Type	Start	End	Confidence
Cytoplasmic	1	201	0.93
Transmembrane Helix	202	224	0.78
Non-Cytoplasmic	225	234	0.72
Transmembrane Helix	235	255	0.88
Cytoplasmic	256	307	0.96
Transmembrane Helix	308	331	0.88
Non-Cytoplasmic	332	348	0.92
Transmembrane Helix	349	369	0.93
Cytoplasmic	370	428	0.75
Transmembrane Helix	429	448	0.78
Non-Cytoplasmic	449	502	0.77
Transmembrane Helix	503	528	0.78
Cytoplasmic	529	547	0.85
Transmembrane Helix	548	572	0.86
Non-Cytoplasmic	573	589	0.77
Transmembrane Helix	590	606	0.87
Cytoplasmic	607	646	0.91