YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sing-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFGVRGMG QPLGIRICCC RVCTCINFGF VLSRIGLLKL MQLGLAMLCE GLLIRYGVPY  60
   61 ADSIGQALTS FLATTGHCFT TTGILLLCYA FSDKSYSLIR QSLFETLFNG LASCMYFSSS 120
  121 SYMGFACVVW LHPQFLVRPG FWAYPAMTAC YYMGYAAGIL HALDAYLAFR HFRGAR

Type	Start	End	Confidence
Cytoplasmic	1	16	0.72
Transmembrane Helix	17	38	0.73
Non-Cytoplasmic	39	67	0.68
Transmembrane Helix	68	91	0.89
Cytoplasmic	92	106	0.90
Transmembrane Helix	107	132	0.83
Non-Cytoplasmic	133	147	0.74
Transmembrane Helix	148	168	0.85
Cytoplasmic	169	176	0.89