YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG9903-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.93
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	148	0.99
Transmembrane Helix	149	169	0.92
Cytoplasmic	170	181	0.75
Transmembrane Helix	182	203	0.81
Non-Cytoplasmic	204	214	0.79
Transmembrane Helix	215	236	0.93
Cytoplasmic	237	245	0.77
Transmembrane Helix	246	265	0.91
Non-Cytoplasmic	266	281	0.76
Transmembrane Helix	282	303	0.91
Cytoplasmic	304	312	0.90
Transmembrane Helix	313	335	0.87
Non-Cytoplasmic	336	341	0.73
Transmembrane Helix	342	362	0.93
Cytoplasmic	363	372	0.83
Transmembrane Helix	373	392	0.93
Non-Cytoplasmic	393	403	0.80
Transmembrane Helix	404	426	0.92
Cytoplasmic	427	454	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNVNKNIGR LLVAVGVLMI LGLQGVRSEY GDLAGNWLVD YDRDELNFFE DSTWSVDLHI  60
   61 YNVLPKDSSL DYYFVVYSKD DRRASSPPLE IKKEDFDLLG SWRGALYVTG VRFGYSSLEV 120
  121 ELKSGAVTET YPKPLPITVL RTQVVDERIT TYVSAALALL MFLNLGTVLD MQRLAGIICR 180
  181 PVGPVVGVVS RFVLMPAVGF GLGRALWPDS WPLQLALFYT ALSPSGGLAN VCAVFLKGNI 240
  241 NLSVATTTIN SLLALALLPI WILVLGRILY EDDELTVPFG QLSGGAAALV ACLAIGVLLR 300
  301 LCLPRTTRFI FRFLKPLSVV LSLCLVGLTV GLNSFVFYEF TWQILVAAVC LPLAGYLSTY 360
  361 LLSKILCRSS TDALTLAIEA SVLNMTMPIV LLQSSQLQQP QLDLVLVVPI ASSLISLVLV 420
  421 VLFYGIRRCL GCNRQQDADA FDHKKLLAEQ EGDV