YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or13a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYSYPYKAL SFPIQCVWLK LNGSWPLTES SRPWRSQSLL ATAYIVWAWY VIASVGITIS  60
   61 YQTAFLLNNL SDIIITTENC CTTFMGVLNF VRLIHLRLNQ RKFRQLIENF SYEIWIPNSS 120
  121 KNNVAAECRR RMVTFSIMTS LLACLIIMYC VLPLVEIFFG PAFDAQNKPF PYKMIFPYDA 180
  181 QSSWIRYVMT YIFTSYAGIC VVTTLFAEDT ILGFFITYTC GQFHLLHQRI AGLFAGSNAE 240
  241 LAESIQLERL KRIVEKHNNI ISFAKRLEDF FNPILLANLM ISSVLICMVG FQIVTGKNMF 300
  301 IGDYVKFIIY ISSALSQLYV LCENGDALIK QSTLTAQILY ECQWEGSDRI EIQSFTPTTK 360
  361 RIRNQIWFMI LCSQQPVRIT AFKFSTLSLQ SFTAILSTSI SYFTLLRSVY FDDEKKLD

Type	Start	End	Confidence
Cytoplasmic	1	39	0.93
Transmembrane Helix	40	65	0.83
Non-Cytoplasmic	66	72	0.90
Transmembrane Helix	73	94	0.94
Cytoplasmic	95	134	0.95
Transmembrane Helix	135	157	0.87
Non-Cytoplasmic	158	186	0.89
Transmembrane Helix	187	207	0.84
Cytoplasmic	208	273	0.78
Transmembrane Helix	274	294	0.93
Non-Cytoplasmic	295	306	0.64
Transmembrane Helix	307	322	0.46
Cytoplasmic	323	385	0.53
Transmembrane Helix	386	406	0.61
Non-Cytoplasmic	407	418	0.37