YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Pis-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIAEHDNVF IFVPNLIGYA RIVLALIAFW FMSTNYVISG WCYVTSALLD AVDGQAARAF  60
   61 NQSTRFGAML DQLTDRCGTT GLLVTLAYFY PRYMFWFQLS IAIDVACHWL FMQTSVVVGR 120
  121 SSHKVNDNFI MRLYYQKDIL TFMCCVNELF YVCLYLLHFT YGPLIFGASL FKILAFLTGP 180
  181 FAVLKALISV MHAYVAGIDL AAVDVRERQE RRQKSEPVSG KKVE

Type	Start	End	Confidence
Cytoplasmic	1	9	0.87
Transmembrane Helix	10	31	0.82
Non-Cytoplasmic	32	93	0.78
Transmembrane Helix	94	118	0.78
Cytoplasmic	119	138	0.91
Transmembrane Helix	139	159	0.90
Non-Cytoplasmic	160	167	0.67
Transmembrane Helix	168	188	0.68
Cytoplasmic	189	224	0.78