YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG11655-PA
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.35
Transmembrane Helix	11	30	0.80
Non-Cytoplasmic	31	151	0.50
Transmembrane Helix	152	174	0.88
Cytoplasmic	175	187	0.38
Transmembrane Helix	188	210	0.76
Non-Cytoplasmic	211	214	0.44
Transmembrane Helix	215	237	0.68
Cytoplasmic	238	244	0.53
Transmembrane Helix	245	268	0.80
Non-Cytoplasmic	269	283	0.69
Transmembrane Helix	284	302	0.81
Cytoplasmic	303	315	0.85
Transmembrane Helix	316	335	0.89
Non-Cytoplasmic	336	344	0.58
Transmembrane Helix	345	366	0.89
Cytoplasmic	367	375	0.81
Transmembrane Helix	376	398	0.84
Non-Cytoplasmic	399	406	0.80
Transmembrane Helix	407	428	0.89
Cytoplasmic	429	455	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPHGRPGWE WSYLLLTLAV GFASTHGWMA HFRPAALTLQ MERGDRVQLK LENVAPSTLQ  60
   61 QPTRYHFRLE SVDTDLASVP GENATISLDV FNTDTRDWTG DIVVNGHFLG QTKIQVKLYD 120
  121 SQRNTSELPT NWSNDSTLDV KIKRPKRVVD DIFLGTIILL MSLLYISFGA ALNLDVLRGL 180
  181 ITRPTGPCIG FVMQVVGMPL LSYALGVFIF PQAPAMQLGL FFTGISPSGG ASNTWSAVLG 240
  241 GNIHLSVLMT TVSNVAAFAT IPLWTITLGQ LIFERAGIKV PYGKIASYSS SLVLPLLLGL 300
  301 LVQKRMPQVA RVLVRLLKPV SAFIILFIIV FAIINNFYLF YLFSWQIVVA GMALPGLGYI 360
  361 FAFLAAKLLH QNAADALTIA IETGIQNTGI AIFLLTTTLE SPEADITTVV PVSVAVMTPL 420
  421 PLLGIYLYNR CWGNKRISEA SATASEAERI AGAIH