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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: rut-PA
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHAVKATRG RPLNTLRFEN DELECLYQRY TLKLQRFSVL GVVALVFVLC GVMAALSLTF  60
   61 NNAATFHNIF NAIVCGLFAV VLVLLQCSVI KDHHLPTLCY GILLFTASIC VVSMPTLGSV 120
  121 FPVDTKEVMA EGVWQIVFVV FLAYAMMPLQ IWEAVAFGIA LPSVHISLTV YKIFTDALRY 180
  181 LEYNQLIANI VIFIGVNVAG LVVNIMMERA QRRTFLDTRN CIASRLEIQD ENEKLERLLL 240
  241 SVLPQHVAMQ MKNDILSPVA GQFHRIYIQK HENVSILFAD IVGFTVLSSQ CSAQELVRLL 300
  301 NELFGRFDQL AHDNHCLRIK ILGDCYYCVS GLPEPRKDHA KCAVEMGLDM IDAIATVVEA 360
  361 TDVILNMRVG IHTGRVLCGV LGLRKWQFDV WSNDVTLANH MESGGEPGRV HVTRATLDSL 420
  421 SGEYEVEAGH GDERSSYLRD HGVDTFFIVP PPHRRKPLML NTLGVRSAIG SRRKLSFRNV 480
  481 SNVVMQLLHT IKFSEPVPFS NIATGSFPSA ASALGGGVSV GGGGGGGGGG VARGSTCEAN 540
  541 SGNVQVSEKG SRKVIRLQKI LHATPPPHGM GYGSVVGSGG GVDSGISGGG GCVSGGIAGG 600
  601 GGVQVTVGTN PNSTASTISR IHRHNHKNNK SQSKVADKFK RPFRKRHSVA AHHQPTNRVN 660
  661 RFLSQAINAR SVDCDKSEHV DRLTLRFRQS DMEREYHKDF DLGFTTAMGC SLLLLILGAA 720
  721 LQVTALPRTL ILLLLFLFAF IWVSAILMLL LAVRLKWIIW DISESFSLRM AITIFTVILI 780
  781 YSVGQVNVFT CVSDHPCSGN GTTSFQNDSH RKCSLPQYVS LSAAFAFLSV SVFLRLPIIF 840
  841 KSLLVLGMGT IYGLFIELSH QNIFECYDNR VNASIPLHLI SLARIAIFMI AILVHGRLVE 900
  901 GTARLDFLWQ LQASQEKKEM DVLQESNKRI LHNLLPAHVA AHFLDAQFRN NMELYHQSYA 960
  961 KVGVIFASVP NFNEFYTEMD GSDQGLECLR LLNEIIADFD ELLKEDRFRG IDKIKTVGST1020
 1021 YMAVVGLIPE YKIQPNDPNS VRRHMTALIE YVKAMRHSLQ EINSHSYNNF MLRVGINIGP1080
 1081 VVAGVIGARK PQYDIWGNTV NVASRMDSTG VPGYSQVTQE VVDSLVGSHF EFRCRGTIKV1140
 1141 KGKGDMVTYF LCDSGNKSLN GEVRNAMSLP QSLHAPDYYM KVSQFPENRV NTDTYSKKEN1200
 1201 GHLYAGNGVE EQQLLLQHQH KQHDPLPLPA PPPPVHHHLH QQQQQRLNSK LQKQPIFMAN1260
 1261 GGLPNIRENG NGHNGEHQQQ QQQQQQHQQQ QQQQQQHGGF MVATTTPPAA VAVPLQPQHH1320
 1321 QLQFQHPHQH PLPSAVSVPV QHQILLHHQL QLQHQPVPSV MLREFNIIEN PTSGGRHQQM1380
 1381 EQLPPHHGSL DLSGMGMGVG AGVLGSDCFM MPRRDRERTY VPPLNQHGHH PPHHLHSNLN1440
 1441 LNQSQHPPSF TSLGYGQCRE SEPLLHASSV APVAKIMPMQ HAPKYEPPRY TSPHTMLSQQ1500
 1501 HQQQQQQQHQ HQQPQSQSAQ DQQTHPAQDP HPLQRQYAMY SQQPQLPPKP VLRTYMKPLP1560
 1561 KLPTDLEESR DMSSTDDLSS RPHSPSMSSS DESYSKTTEG EGEGDEDSPR MVNGGHLHHR1620
 1621 NGYHLPAGGL VNPLQWLYPC DIQVDPTSPV VDMAHLHDFE LSSTTESQGH HTNSNTTSNT1680
 1681 QHKGDSCNSF DFQKAAVGTA AGAAIATKSP FERELQRLLN ESSRARCLAT ATTTAGAIST1740
 1741 TDQTASNGSR ELSYSLSNGK LSSANGHGVG GSGSGSGSGS GSGSAVGNGS GGSGSSNGNL1800
 1801 SGGSGSNSNS GNNNSSHHKT EQQQNMDHEH LAGGKLLGSN SFMIAKHPVG LEAIKEITRN1860
 1861 KNPSESSQMQ TSDTESCEIL HENRNQMHVL AMLEMHTAKE LNGSHAHHGQ HHQQPQRTHR1920
 1921 QRPRSKELQY SHESLDGLDG AVQSQSQQRH QRYHHHHHHQ QRQQQQQRYN HVQEQEERDD1980
 1981 TEDNLADEEF EDDEVGRDVR QKRLQKSELN HKRSEVATEA GNHHDDEVEE EDDDDDEEED2040
 2041 HRNGGREAAP LTNGSMRGLE ANVINDELKY GATHLNHQSM DSNPLESQSE WSDDDCREEA2100
 2101 TGGAESTGYI TDEPGLENIS LLNEAGLTDA EGALSDVNSL YNAPDVDDTS VSSRASSRLL2160
 2161 SLDSLSGLYD CDLDSKHELA IVNASHKISS KFGQPLSPAQ QQHQQQQQQQ QQQQQQHHQQ2220
 2221 QLQQNPQHTQ AQSHLAPVQF QSAEELRE

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