YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG11162-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTLLAGWTQ SGDYLQDKWT LLLDTVGEES WRLWVVGSTV VIFIVYWLYA GIFTLMDITN  60
   61 RPRFLRKYKI QPGQNEPVNL AKLWHAVKVV LFNLTVVNFL VSWVVYEFVY KSENSQDIRV 120
  121 LPTFKRSLRD LVVFVVLEEI MFYYAHRLLH HRSVYKYVHK KHHEWTAPIA AITLYAHPVE 180
  181 HVLANLLPVA TSIAILGTHV ALAYVIFALA IINSMSDHTG YSFPWSAGSV RFHDYHHAKF 240
  241 NYNYGVLGFL DKLHGTYRAP AEQKAPSQRI KKIKKKSK

Type	Start	End	Confidence
Cytoplasmic	1	30	0.62
Transmembrane Helix	31	53	0.86
Non-Cytoplasmic	54	85	0.59
Transmembrane Helix	86	106	0.77
Cytoplasmic	107	126	0.66
Transmembrane Helix	127	146	0.53
Non-Cytoplasmic	147	188	0.58
Transmembrane Helix	189	212	0.82
Cytoplasmic	213	278	0.78