YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG3812-PA, CG381...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITMTSFIEL LGLFLLLMLP FLYETNHIFR YYFKFLMYYG IVSFNSIILI PAFLTRPCDV  60
   61 RNLLWASTWC HRVSTLIGLR WELRGKEHLA KDQACIIVAN HQSSLDVLGM FNIWHVMNKC 120
  121 TVVAKRELFY AWPFGLAAWL AGLIFIDRVR GEKARETLND VNRRIKKQRI KLWVFPEGTR 180
  181 RNTGALHPFK KGAFHMAIDQ QIPILPVVFS SYCTFLNDKK KILNSGRIVI TTLPPVSTEG 240
  241 LTKDDIDVLM ERVRSQMIET FKVTSAEALH RYKPIKKVGI PAASSASTSS TTTTTLASPG 300
  301 TAVTPVADAA VAAAAAVASS SSAYGQPPGY EAGAAKASLL KTL

Type	Start	End	Confidence
Cytoplasmic	1	6	0.58
Transmembrane Helix	7	27	0.86
Non-Cytoplasmic	28	34	0.53
Transmembrane Helix	35	55	0.93
Cytoplasmic	56	127	0.58
Transmembrane Helix	128	146	0.80
Non-Cytoplasmic	147	343	0.56