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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Lsp1alpha-PA
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFAIAFLAC VAVVTATAYH KTHDIKVADK AFLMKQKFLF EIVYRVEDPL MFEEYIAMGK  60
   61 QFYFDKEHYT HFDLYMEKFF EAHKAHALLP KGEFFGALVK HHAKQARGLF NFFYYAKDWE 120
  121 TFMTNVAFAR MHFNEGMFVY ALTLAVIHRD DFHGLVLPAI HEIFPQFFFN SKFVMEAEKF 180
  181 DYEMWMKTSL YEKEYMDVYH KIPTFSSYEH GYKQGMAYGY GKTHGHGQTY EHEFGSMYQT 240
  241 SDYMYMKDFK TWQWWKLMGL GEHWYSESNY ILRENIYEYN QESNWLTMMK DVKKFYMPVD 300
  301 YSRDLYLYNE ESKLSYFTED LGWNSYWYYL NMDYSFFLDG KTFGLQNDRR GEWWLYNVHQ 360
  361 LLSRYHMERL SHGLGEIPQF SWFHQIEMGY DPQLIYYNGI GYSYRKNYYE LETYGNFEML 420
  421 DKITGFQQRI QNIVELGYYQ TTDGHMIDLR KPESIEIIGN MLQGNVDAID NIFFQFWYML 480
  481 AHMYFADTHY YQMEVYPNVM LNFETMMRDP MFYMFYKSIA QVYFQFMHHL PKYTKEQLLM 540
  541 PGVTLKHVEV SELVTYFDLV DFDVTNMLNG KMVFHEGQFL WDKSLFARQM RLNHKPFSYT 600
  601 YTIDSARDEK VVIRAFLGPK FDEYGRMISL TDNRMNFMEI DEFTYTLKTG SNLITRKSTD 660
  661 FAWTVKDRTT YTELYYYTMM AFDGKYDYPL DLTEPHCGFP DRLVLPMGWK KGMPMQMFFM 720
  721 VVPYMAPQHE QFSTFDYTYS CGIGSGARHV DSLPFGYPFD REINEYEFHV PNMYFKDVTI 780
  781 YHADTMEKYY NYKEYTNYGH FDYSFFNDYY TKYFKL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle