YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220954328, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKDEKSQQ GEELVKVNKW DGSAVKHALD DAVKTCLLGD RPQLKEQFGL VNTRLALCAL  60
   61 AVSVAIMAHA WDFTHPFPES RPVLLFSVLA YFALLGILTL HSSFREKGTF AVALQKDKER 120
  121 ERLWEASSDM RKYDDKYLLT LSVRDTKNGK RREQSSNKSC AAFIDQNGIV LDNLVANEVN 180
  181 RLFNALAADK KNASSLSSN

Type	Start	End	Confidence
Cytoplasmic	1	49	0.99
Transmembrane Helix	50	71	0.92
Non-Cytoplasmic	72	82	0.82
Transmembrane Helix	83	102	0.94
Cytoplasmic	103	199	0.98