YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG1756-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKGAQRTP LSIFRIFHIF RIFRIFRIFH IFRIFHIFHN ASVLAGPGRE TFVVWIFRHL  60
   61 ERPAEVERLS HLKDIVKTHR ERFLHTILNN TEVHNLDELL SFELAKYEAA VQQAAEGGLL 120
  121 IVADKDFPEP YERWSILQAV FFSSTVLTTI GYGNIVPVTT GGRVFCICFA LIGIPFTLTV 180
  181 IADWGRLFAT AVSVFGKHMP TKPKFTNFIG KTWFYAILAV GFLGVYLAAG AGLLLLWEDD 240
  241 WTFFDGFYFC FITMTTIGFG DLVPKKPNYM LLCTLYILIG LALTSTIIEL VRRQYATSWA 300
  301 KLQELSGPMA ETLRRLGETA GTGLDYTALQ KVLTVSMPKW NSKKNEHSPD IAALEAITNA 360
  361 ILKEVKEAQN NKPKVLQIVI YESSV

Type	Start	End	Confidence
Cytoplasmic	1	19	0.80
Transmembrane Helix	20	39	0.69
Non-Cytoplasmic	40	133	0.66
Transmembrane Helix	134	156	0.81
Cytoplasmic	157	163	0.51
Transmembrane Helix	164	185	0.88
Non-Cytoplasmic	186	212	0.57
Transmembrane Helix	213	236	0.91
Cytoplasmic	237	242	0.50
Transmembrane Helix	243	263	0.87
Non-Cytoplasmic	264	268	0.55
Transmembrane Helix	269	291	0.87
Cytoplasmic	292	385	0.63