YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or10a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEWLRFLKR DQQLDVYFFA VPRLSLDIMG YWPGKTGDTW PWRSLIHFAI LAIGVATELH  60
   61 AGMCFLDRQQ ITLALETLCP AGTSAVTLLK MFLMLRFRQD LSIMWNRLRG LLFDPNWERP 120
  121 EQRDIRLKHS AMAARINFWP LSAGFFTCTT YNLKPILIAM ILYLQNRYED FVWFTPFNMT 180
  181 MPKVLLNYPF FPLTYIFIAY TGYVTIFMFG GCDGFYFEFC AHLSALFEVL QAEIESMFRP 240
  241 YTDHLELSPV QLYILEQKMR SVIIRHNAII DLTRFFRDRY TIITLAHFVS AAMVIGFSMV 300
  301 NLLTLGNNGL GAMLYVAYTV AALSQLLVYC YGGTLVAESS TGLCRAMFSC PWQLFKPKQR 360
  361 RLVQLLILRS QRPVSMAVPF FSPSLATFAA ILQTSGSIIA LVKSFQ

Type	Start	End	Confidence
Cytoplasmic	1	43	0.76
Transmembrane Helix	44	64	0.88
Non-Cytoplasmic	65	71	0.67
Transmembrane Helix	72	94	0.78
Cytoplasmic	95	135	0.89
Transmembrane Helix	136	158	0.80
Non-Cytoplasmic	159	193	0.77
Transmembrane Helix	194	217	0.79
Cytoplasmic	218	282	0.93
Transmembrane Helix	283	305	0.90
Non-Cytoplasmic	306	313	0.79
Transmembrane Helix	314	337	0.75
Cytoplasmic	338	376	0.81
Transmembrane Helix	377	400	0.79
Non-Cytoplasmic	401	406	0.77