YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr10a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSPDERKSF WERHEFKFYR YGHVYALIYG QVVIDYVPQR ALKRGVKVLL IAYGHLFSML  60
   61 LIVVLPGYFC YHFRTLTDTL DRRLQLLFYV SFTNTAIKYA TVIVTYVANT VHFEAINQRC 120
  121 TMQRTHLEFE FKNAPQEPKR PFEFFMYFKF CLINLMMMIQ VCGIFAQYGE VGKGSVSQVR 180
  181 VHFAIYAFVL WNYTENMADY CYFINGSVLK YYRQFNLQLG SLRDEMDGLR PGGMLLHHCC 240
  241 ELSDRLEELR RRCREIHDLQ RESFRMHQFQ LIGLMLSTLI NNLTNFYTLF HMLAKQSLEE 300
  301 VSYPVVVGSV YATGFYIDTY IVALINEHIK LELEAVALTM RRFAEPREMD ERLTREIEHL 360
  361 SLELLNYQPP MLCGLLHLDR RLVYLIAVTA FSYFITLVQF DLYLRKKS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.87
Transmembrane Helix	21	38	0.54
Non-Cytoplasmic	39	48	0.50
Transmembrane Helix	49	73	0.85
Cytoplasmic	74	144	0.48
Transmembrane Helix	145	168	0.79
Non-Cytoplasmic	169	179	0.52
Transmembrane Helix	180	194	0.29
Cytoplasmic	195	268	0.63
Transmembrane Helix	269	290	0.76
Non-Cytoplasmic	291	381	0.51
Transmembrane Helix	382	403	0.82
Cytoplasmic	404	408	0.51