YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG32669-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.83
Transmembrane Helix	9	29	0.95
Cytoplasmic	30	47	0.91
Transmembrane Helix	48	68	0.94
Non-Cytoplasmic	69	78	0.79
Transmembrane Helix	79	102	0.86
Cytoplasmic	103	122	0.86
Transmembrane Helix	123	145	0.87
Non-Cytoplasmic	146	153	0.73
Transmembrane Helix	154	174	0.92
Cytoplasmic	175	183	0.79
Transmembrane Helix	184	205	0.90
Non-Cytoplasmic	206	234	0.94
Transmembrane Helix	235	254	0.94
Cytoplasmic	255	273	0.91
Transmembrane Helix	274	296	0.95
Non-Cytoplasmic	297	329	0.91
Transmembrane Helix	330	351	0.86
Cytoplasmic	352	380	0.89
Transmembrane Helix	381	403	0.91
Non-Cytoplasmic	404	410	0.71
Transmembrane Helix	411	433	0.90
Cytoplasmic	434	439	0.91
Transmembrane Helix	440	458	0.95
Non-Cytoplasmic	459	506	0.97
Transmembrane Helix	507	530	0.92
Cytoplasmic	531	604	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLGAWDYT ILAVVLIISV AIGIYYRFVG GKQSTTTEYL LADRSMNVAP VAFSLMASFM  60
   61 SAVTILGVSM ENYQYGTMFV VINLSYVLST PVAAYLIIPV FYRLKTASVY EYLELRFGYA 120
  121 TRLAASLSFS LQMVLYMGIV VYAPALALEA VTGLSQVFSI VIVGVVCTFY ATLGGMKAVL 180
  181 ITDIYQSLLM FAAVFSVIIC AWVKAGSLEV IWRVAQENGR INLTNFSVDP TERHTWFTQI 240
  241 LGGCATYLAI YGVNQTQVQR LMAVKSLSAA RAALWWCLPI LCLLSLSTCF SGLCIYWYYR 300
  301 DCDPLLEGRV NSRDQVMPLF VVDTMGEYTG LAGLFVSGIF CASLSTISSI ISSLAAVTLE 360
  361 DYLKPLVSCC AKRTLTDRQT LWYSKLLSLF FGALCIGMAF MAGSIGGLLQ AALSIFGIIG 420
  421 GPLLGLFTLG MYVTKANEKG AIGGLLISLA FCFWIGFGQP KPPLVSLDMS TAGCPVDRSF 480
  481 ARDIFLKTVI AVAEEEHYFY LYRISYMWYA ALGFLITFFG GWLLSWLFAL LKWDNNRRIY 540
  541 QDADCTLIKH DLFVPPIAKR LQRRQMPLLV VTGTSSEIGG ITTESATAPP RLDEIEWEKH 600
  601 KAVA