YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sesB-PC, sesB-PD
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNISASITS QSKMGKDFDA VGFVKDFAAG GISAAVSKTA VAPIERVKLL LQVQHISKQI  60
   61 SPDKQYKGMV DCFIRIPKEQ GFSSFWRGNL ANVIRYFPTQ ALNFAFKDKY KQVFLGGVDK 120
  121 NTQFWRYFAG NLASGGAAGA TSLCFVYPLD FARTRLAADT GKGGQREFTG LGNCLTKIFK 180
  181 SDGIVGLYRG FGVSVQGIII YRAAYFGFYD TARGMLPDPK NTPIYISWAI AQVVTTVAGI 240
  241 VSYPFDTVRR RMMMQSGRKA TEVIYKNTLH CWATIAKQEG TGAFFKGAFS NILRGTGGAF 300
  301 VLVLYDEIKK VL

Type	Start	End	Confidence
Cytoplasmic	1	184	0.66
Transmembrane Helix	185	205	0.86
Non-Cytoplasmic	206	223	0.91
Transmembrane Helix	224	245	0.93
Cytoplasmic	246	312	0.91