YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0312071, Tan...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQHSKKETT SSSGSHAAQS NRHNNIGGGG GNGNSNSISG SSNNKSHKRQ AANGSLKSPL  60
   61 LTITNINSHS QKGALKSPVS KVKQSSNSSS SNSNSKTLSG SSMQETGSSA TSLLAAGGKA 120
  121 KKNQKDKQRE RERLERGQLV LWRRPLQTTK YCGLELFTLL RTWSTRLLQQ RLLLATLIVL 180
  181 SIVFSVIYKI DGPHQLAIEF VRRNTWFFVY WLGLGVLSSV GLGTGLHTFL LYLGPHIASV 240
  241 TLAAYECNSL RFPQPPYPDD IICPEEPYDK HVPNIWSIMS KVRLEAFLWG AGTALGELPP 300
  301 YFMAKAARLS GYDPEDAEEL AEFEALNAKR HQKNLSMMDR GKLFMERVVE RVGFFGILAC 360
  361 ASIPNPLFDL AGITCGHFLV PFWTFFGATL IGKAVIKMHI QKIFVIIAFN ETLIERAVDL 420
  421 LATLPVLGHK LQEPFKSFLK NQKQRLHRQQ RGAAGATTGA GDSGNLLSRI FETFVIGMVC 480
  481 YFVVSIVNSL AQSYHKRLHK KPASPVAATT PTRQSTGASK KAGKQKALRD

Type	Start	End	Confidence
Cytoplasmic	1	170	0.69
Transmembrane Helix	171	190	0.92
Non-Cytoplasmic	191	206	0.65
Transmembrane Helix	207	231	0.89
Cytoplasmic	232	347	0.77
Transmembrane Helix	348	368	0.83
Non-Cytoplasmic	369	374	0.61
Transmembrane Helix	375	396	0.81
Cytoplasmic	397	411	0.71
Transmembrane Helix	412	426	0.29
Non-Cytoplasmic	427	469	0.44
Transmembrane Helix	470	491	0.71
Cytoplasmic	492	530	0.70