YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or9a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKVKGKKQ EEKDQSLRVQ ILVYRCMGID LWSPTMANDR PWLTFVTMGP LFLFMVPMFL  60
   61 AAHEYITQVS LLSDTLGSTF ASMLTLVKFL LFCYHRKEFV GLIYHIRAIL AKEIEVWPDA 120
  121 REIIEVENQS DQMLSLTYTR CFGLAGIFAA LKPFVGIILS SIRGDEIHLE LPHNGVYPYD 180
  181 LQVVMFYVPT YLWNVMASYS AVTMALCVDS LLFFFTYNVC AIFKIAKHRM IHLPAVGGKE 240
  241 ELEGLVQVLL LHQKGLQIAD HIADKYRPLI FLQFFLSALQ ICFIGFQVAD LFPNPQSLYF 300
  301 IAFVGSLLIA LFIYSKCGEN IKSASLDFGN GLYETNWTDF SPPTKRALLI AAMRAQRPCQ 360
  361 MKGYFFEASM ATFSTIVRSA VSYIMMLRSF NA

Type	Start	End	Confidence
Cytoplasmic	1	41	0.97
Transmembrane Helix	42	63	0.93
Non-Cytoplasmic	64	70	0.82
Transmembrane Helix	71	92	0.87
Cytoplasmic	93	140	0.92
Transmembrane Helix	141	162	0.86
Non-Cytoplasmic	163	196	0.93
Transmembrane Helix	197	221	0.88
Cytoplasmic	222	268	0.97
Transmembrane Helix	269	289	0.94
Non-Cytoplasmic	290	296	0.83
Transmembrane Helix	297	315	0.95
Cytoplasmic	316	362	0.97
Transmembrane Helix	363	386	0.74
Non-Cytoplasmic	387	392	0.77