YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr9a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLWLEHFLT GYFQLCGLVC GWSGSRLGRL LSSTFLVLIL IELVGEIETY FTEENPDNES  60
   61 VPAYFAKVIM GVNMAYKMIH AWIALSALFE CRRFRYLLEE LPPVKATSFI YRHLILEIIL 120
  121 FACNAFLVLS EYTIRGIYLE NLRYAYSLQA VRARYLQMMV LVDRLDGKLE QLHHRVISGS 180
  181 SDYKTLRLDY AHLAKVTRSL SHLFGLSLLL LNVLCLGDWI IVCNVYFMVA YLQVLPATLF 240
  241 LFGQVMFVVC PTLIKIWSIC AASHRCVSKS KHLQQQLKDL PGQTPVERSQ IEGFALQIMQ 300
  301 DPIQIDVCGI YHLNLQTLAG MFFFILEALV IFLQFVSLVR T

Type	Start	End	Confidence
Cytoplasmic	1	7	0.57
Transmembrane Helix	8	41	0.55
Non-Cytoplasmic	42	68	0.54
Transmembrane Helix	69	89	0.53
Cytoplasmic	90	201	0.64
Transmembrane Helix	202	222	0.89
Non-Cytoplasmic	223	233	0.51
Transmembrane Helix	234	259	0.77
Cytoplasmic	260	316	0.72
Transmembrane Helix	317	338	0.84
Non-Cytoplasmic	339	341	0.67