YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	amx-PA, FBpp0298282
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLQRQCIVV NMRSAIVLIM IFVLTGIRNS ETASGGNQMD LSDSKGDHKD NSNASNGNGN  60
   61 ANDNEVYVPP LVSSMVAKSG GGAGGLLDNI TAYSSSSSSS SSNGNNNMLC PYDKETPCDR 120
  121 LQFPCIRCNY NHGCIYGRDL NVTCEVINNV QCLGERSFQR QMNCRYCYQT EMWQQSCGQR 180
  181 SSCNSATDKL FRTNCTVHHD VLCLGNRSFT RNLRCNWTQG YRWSTALLIS LTLGGFGADR 240
  241 FYLGHWQEGI GKLFSFGGLG VWTIIDVLLI SMHYLGPADG SLYI

Type	Start	End	Confidence
Cytoplasmic	1	8	0.60
Transmembrane Helix	9	27	0.60
Non-Cytoplasmic	28	220	0.80
Transmembrane Helix	221	243	0.85
Cytoplasmic	244	252	0.68
Transmembrane Helix	253	275	0.88
Non-Cytoplasmic	276	284	0.75