YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr8a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGHLGRVLQ FHLRLYQVLG FHGLPLPGDG NPARTRRRLM AWSLFLLISL SALVLACLFS  60
   61 GEEFLYRGDM FGCANDALKY VFAELGVLAI YLETLSSQRH LANFWWLHFK LGGQKTGLVS 120
  121 LRSEFQQFCR YLIFLYAMMA AEVAIHLGLW QFQALTQHML LFWSTYEPLV WLTYLRNLQF 180
  181 VLHLELLREQ LTGLEREMGL LAEYSRFASE TGRSFPGFES FLRRRLVQKQ RIYSHVYDML 240
  241 KCFQGAFNFS ILAVLLTINI RIAVDCYFMY YSIYNNVINN DYYLIVPALL EIPAFIYASQ 300
  301 SCMVVVPRIA HQLHNIVTDS GCCSCPDLSL QIQNFSLQLL HQPIRIDCLG LTILDCSLLT 360
  361 RMACSVGTYM IYSIQFIPKF SNTYM

Type	Start	End	Confidence
Cytoplasmic	1	40	0.89
Transmembrane Helix	41	61	0.93
Non-Cytoplasmic	62	79	0.82
Transmembrane Helix	80	97	0.69
Cytoplasmic	98	127	0.75
Transmembrane Helix	128	150	0.87
Non-Cytoplasmic	151	158	0.66
Transmembrane Helix	159	175	0.64
Cytoplasmic	176	244	0.75
Transmembrane Helix	245	264	0.72
Non-Cytoplasmic	265	283	0.71
Transmembrane Helix	284	304	0.62
Cytoplasmic	305	385	0.65