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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|220952152
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.67
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYPVAFVLLL LVAPNADANL GRDDERFHEE LVVRPLSGDH VNTYFQFTTR WHYGEKDNLY  60
   61 HTQLTPRVIA ELLQQFAVKE LHIGLTQGLW RYETWGYPIV EATSGAEMWA WFSGANLTNR 120
  121 DVDRQWKELA NVFSGVLCAS LNFVDNTNSI APRHLIRPQF MPANGQRFVR YATLPREIVC 180
  181 TENLTPWKKL LPCGSASGFA SLLNSGHVHN TKYHSLGLKV RVLCEDHDED NCIVELTQTA 240
  241 NLVYDLRLFE LSNNDFSLRR LFGMGLNGYC ELAESSKIYV QRNELGERYQ LVPEPVHEVK 300
  301 TTRGGHSVVY SVYDMHEQFK EAGERLFNVA WLAPKSANRR RNLAKPSLPP VTVHRYLLGH 360
  361 GQERGRIVTE VTNSHYDALP IMLQEVIPWY VHAYLHTLSI RRKPQRVNEY GGQRLTFKLL 420
  421 HYTPGKQREL PSHLEIGFML PGQTSALISI DVDYLLLKWL EYPPDANHGH YIGSAIVSSQ 480
  481 LPMGRNYTAL PPEGHLFEHS FNATRPSYVL SLHTEALIVS LPTPDFSMPY NVICLACTVV 540
  541 ALAFGPIHSV ATKMIIVGRQ TSAPKNFVKK IFNQLFRRGK ATDETAAEGE GLPAAGAAAT 600
  601 GVASGRAAIS PGSPSGDQPL LEDLDEEEEE EQD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle