YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or7a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSTRVATK QEVPESRRAF RNLFNCFYAL GMQAPDGSRP TTSSTWQRIY ACFSVVMYVW  60
   61 QLLLVPTFFV ISYRYMGGME ITQVLTSAQV AIDAVILPAK IVALAWNLPL LRRAEHHLAA 120
  121 LDARCREQEE FQLILDAVRF CNYLVWFYQI CYAIYSSSTF VCAFLLGQPP YALYLPGLDW 180
  181 QRSQMQFCIQ AWIEFLIMNW TCLHQASDDV YAVIYLYVVR IQVQLLARRV EKLGTDDSGQ 240
  241 VEIYPDERRQ EEHCAELQRC IVDHQTMLQL LDCISPVISR TIFVQFLITA AIMGTTMINI 300
  301 FIFANTNTKI ASIIYLLAVT LQTAPCCYQA TSLMLDNERL ALAIFQCQWL GQSARFRKML 360
  361 LYYLHRAQQP ITLTAMKLFP INLATYFSIA KFSFSLYTLI KGMNLGERFN RTN

Type	Start	End	Confidence
Cytoplasmic	1	48	0.92
Transmembrane Helix	49	71	0.89
Non-Cytoplasmic	72	88	0.72
Transmembrane Helix	89	108	0.77
Cytoplasmic	109	144	0.81
Transmembrane Helix	145	167	0.72
Non-Cytoplasmic	168	187	0.60
Transmembrane Helix	188	203	0.25
Cytoplasmic	204	281	0.56
Transmembrane Helix	282	304	0.89
Non-Cytoplasmic	305	310	0.53
Transmembrane Helix	311	332	0.65
Cytoplasmic	333	377	0.51
Transmembrane Helix	378	400	0.52
Non-Cytoplasmic	401	413	0.37