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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: sws-PA
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVLEMLRAS ASGSYNTIFS DAWCQYVSKQ ITATVYMYFA LVMMSLLFIA WFLYFKRMAR  60
   61 LRLRDEIARS ISTVTNSSGD MRGLRFRKRD KMLFYGRRML RKMKNVSGQM YSSGKGYKRR 120
  121 AVMRFARRIL QLRRDNMPLE MRTVEPPAEY LEETIEGSDR VPPDALYMLQ SIRIFGHFEK 180
  181 PVFLRLCKHT QLLELMAGDY LFKITDPDDS VYIVQSGMIN VYISNADGST LSLKTVRKGE 240
  241 SVTSLLSFID VLSGNPSYYK TVTAKAIEKS VVIRLPMQAF EEVFQDNPDV MIRVIQVIMI 300
  301 RLQRVLFTAL RNYLGLNAEL VQNHMRYKSV STMSGPINSQ TSQSSRQAPN GPPMVISQMN 360
  361 LMQSAVSGTG SSGVSVTVTR PPSSPSRHSR EEHTLSDPNP NPDGSFHGTT NLFTEVHGDA 420
  421 PNADLFHQQQ QQHSVGNLST RRSSITLMAP DGSHSCLQTP GVTTSIDMRL VQSSAVDSLR 480
  481 KELGLSEEDS HIIEPFVELR ELEPNVTLIT EGNADDVCVW FVMTGTLAVY QSNQDATRAK 540
  541 QDKSDMLIHF VHPGEIVGGL AMLTGEASAY TIRSRSITRI AFIRRAAIYQ IMRQRPRIVL 600
  601 DLGNGVVRRL SPLVRQCDYA LDWIFLESGR AVYRQDESSD STYIVLSGRM RSVITHPGGK 660
  661 KEIVGEYGKG DLVGIVEMIT ETSRTTTVMA VRDSELAKLP EGLFNAIKLR YPIVVTKLIS 720
  721 FLSHRFLGSM QTRSGSGAPG APVEANPVTH KYSTVALVPI TDEVPMTPFT YELYHSLCAI 780
  781 GPVLRLTSDV VRKQLGSNIF EAANEYRLTS WLAQQEDRNI ITLYQCDSSL SAWTQRCMRQ 840
  841 ADVILIVGLG DRSHLVGKFE REIDRLAMRT QKELVLLYPE ASNAKPANTL SWLNARPWVT 900
  901 KHHHVLCVKR IFTRKSQYRI NDLYSRVLLS EPNMHSDFSR LARWLTGNSI GLVLGGGGAR 960
  961 GAAHIGMLKA IQEAGIPVDM VGGVSIGALM GALWCSERNI TTVTQKAREW SKKMTKWFLQ1020
 1021 LLDLTYPITS MFSGREFNKT IHDTFGDVSI EDLWIPYFTL TTDITASCHR IHTNGSLWRY1080
 1081 VRSSMSLSGY MPPLCDPKDG HLLLDGGYVN NLPADVMHNL GAAHIIAIDV GSQDDTDLTN1140
 1141 YGDDLSGWWL LYKKWNPFTS PVKVPDLPDI QSRLAYVSCV RQLEEVKNSD YCEYIRPPID1200
 1201 KYKTLAFGSF DEIRDVGYVF GKNYFESMAK AGRLGRFNQW FNKEPPKRVN HASLNEYTFI1260
 1261 DLAQIVCRLP ETYAVNTAEL FSEDEDCDGY ISEPTTLNTD RRRIQVSRAG NSLSFSETEM1320
 1321 DSDVELDLKL ERKTDKSTQS SPPSNSRSDM RGKEEARHMS NWHWGVKHKD ETGSGATEAT1380
 1381 KTQTGQEQEL QQEQQDQGAT AEQLVDKDKE ENKENRSSPN NETKN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle