YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG1444-PA
Protein type:	Transmembrane
Type Confidence:	0.57
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEENNSQVLS LLGGLAIGIV GFQVFRKVLP WIYANVVGPK VFGSSVDLSK MGEWAVVTGS  60
   61 TDGIGKAYAK ELARRGLKLV LISRSLEKLN VVAKEIGDKY GVEVRVIDVD FTGGDEIYDK 120
  121 IREKTTGLNV GVLVNNVGIS YGHPEYFLDC YKADPPFLRN IVAANIHSVT HMTALFLPGM 180
  181 ISQRRGVIIN VSSTAGVIPN PLLSVYSSTK AFVNKFSDDL QTEYKEHGIL IQSVQPGFVA 240
  241 TNMSKIRKAS VFAPSPETYV RSALSTLGIA TQTAGYLPHA LLQLVIHFTE AVFGEQFARN 300
  301 IVMKNILGTR KRALRRLAKE Q

Type	Start	End	Confidence
Cytoplasmic	1	7	0.29
Transmembrane Helix	8	25	0.49
Non-Cytoplasmic	26	321	0.71