YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4607-PB, CG4607-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	48	0.97
Transmembrane Helix	49	70	0.93
Non-Cytoplasmic	71	88	0.95
Transmembrane Helix	89	109	0.95
Cytoplasmic	110	117	0.89
Transmembrane Helix	118	138	0.94
Non-Cytoplasmic	139	147	0.85
Transmembrane Helix	148	169	0.91
Cytoplasmic	170	181	0.81
Transmembrane Helix	182	202	0.95
Non-Cytoplasmic	203	209	0.71
Transmembrane Helix	210	229	0.92
Cytoplasmic	230	301	0.97
Transmembrane Helix	302	325	0.89
Non-Cytoplasmic	326	336	0.70
Transmembrane Helix	337	358	0.88
Cytoplasmic	359	367	0.85
Transmembrane Helix	368	388	0.93
Non-Cytoplasmic	389	396	0.83
Transmembrane Helix	397	420	0.89
Cytoplasmic	421	431	0.83
Transmembrane Helix	432	453	0.90
Non-Cytoplasmic	454	464	0.77
Transmembrane Helix	465	484	0.95
Cytoplasmic	485	525	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGQQEEQLV PPPAYKPTVV AKDTTKDSHA KEKPLGEGRL AVLRQELMVF LGNSGVLGSG  60
   61 MVVSMPAVTL NQLHDETQPF WLNKDESSWF ASIQNMACPL GGLLVSYFLD RIGRKHTILL 120
  121 TNLIGLIGWI LLVTSFMHSD RDMIYYQMLL GRCFGGIMIG MFVSPVGVYS AEISLPKIRG 180
  181 RLILGTSLGL ASGILLMYCL GYFIRHNIQL IFGISCCYQL AATLLVFPMP ESPSWLLTRG 240
  241 KEERARKSLR YFRGLPKKEV DYVPEFEAEL AHMKELADAS NTTAAGESLS QMIHRPEVYK 300
  301 PVLMMTTFFG FQQACGVVVI IVYAVQIAQQ AGVTIDPVLV AVMLGVARII TTLFMSGIFE 360
  361 KWGRKPSGIF SATGMGACML LLAGGNWFPD TLGTLHWLPV ACIVAHIVFS TMGMLTLPFF 420
  421 MISEVFPQRA RGSASGIAIF FGMILAFIML KIYPNMEAAL GTANLFAFYA GISFLAAAFI 480
  481 GVFVPETRGR TLEELEERWQ TGKFSRRLTI VNLKDVELHE VFLKK