YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx7-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNTFSSVRQ YLKFDLTRVV IDNIVFKLHY RWTFVILLVA TLLITSRQYI GEHIQCLSDG  60
   61 VVSPVINTFC FFTPTFTVVR DQNQTAYRPG SEPPGIGAFD PEKDTIKRHA YYQWVPFVLF 120
  121 FQALCFYIPH ALWKSWEGGR IKALVFGLRM VGLTRYLKND SLRIGKLNIP SMAEAEERVK 180
  181 DIRRTMIDRM RLNQSWGAHL VFAEVLNLIN LLLQITWTNR FLGGQFLTLG PHALKNRWSD 240
  241 ELSVLDLVFP KITKCKFHKF GDSGSIQMHD ALCVMALNIM NEKIYIILWF WYAFLLIVTV 300
  301 LGLLWRILTL CFYRNVTFTR WSLYWAKPGQ LDENELLAVI DKCNFSNWMF LFFLRSNLSE 360
  361 FLFKKVIYHL ASEFPNPDHD NDVNAYREAP PTPAKNRYPE LSGLDTIDSP LLHLRRNGSP 420
  421 SAGGAQGPST SDMAKLPV

Type	Start	End	Confidence
Cytoplasmic	1	27	0.79
Transmembrane Helix	28	50	0.72
Non-Cytoplasmic	51	59	0.57
Transmembrane Helix	60	79	0.41
Cytoplasmic	80	110	0.59
Transmembrane Helix	111	133	0.81
Non-Cytoplasmic	134	138	0.49
Transmembrane Helix	139	157	0.44
Cytoplasmic	158	195	0.88
Transmembrane Helix	196	217	0.86
Non-Cytoplasmic	218	286	0.84
Transmembrane Helix	287	308	0.91
Cytoplasmic	309	438	0.84