YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Cht11-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNYEKLDGS SAGRITDELS RKEQRNCSLR TLVCWSALLF SLLCLCLGFI GLGLLGIQTG  60
   61 EVHKVGQRLV CYYASDGTHN LSLLDVPGDL CTHINIGPAT LDNATIVLPD TLRQVLQNDT 120
  121 RSFRAAHPQV HLLLWIGGAD SGRSFALMVA NHAMRKLFLR SLREILRTYP SLDGIDLDWE 180
  181 FPSAYDRERM HLSQLLYEIR TEWRREKRTN DILSLAVAAP EGIAFYAYDI REINLYADYV 240
  241 NLMSYDFHFY REDTPFTGLN APLYARSQER SLMATFNINY TVQWWLKSGL EPQRLVVGLP 300
  301 TYGHSFTLVN PLNHRIGAPA SGYGKCGQLG FTTLTETCEC VTKFFKPNLS YDAESCSPYL 360
  361 SALQEWISYE NQTSIACKAN YVKSLNLGGV MVFSLNTDDL KNSCSIMPNL KYSEKPVFPL 420
  421 TQAIKDILRE SL

Type	Start	End	Confidence
Cytoplasmic	1	30	0.97
Transmembrane Helix	31	55	0.89
Non-Cytoplasmic	56	432	0.79