YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG12796-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFTSSSSPA WDYRSSPEAL GVVPFLWQHQ NATETPTEIT LQATSFGAGH LLWLAINAFL  60
   61 FVLILGGNIL TIVAVRTCRH LRSVISNLFI LSLAVSDFCV GLALPYHLVF YMGSDIGAMR 120
  121 GPCLLRFFLL ICACCVSMLT LISIAVDRYI AVVYALHYRR YMTRRVAYSI IIFNWCLGAL 180
  181 VALLPVFWNR WPDAQACEFD EVLAPGYIAG VITPGFVIIW ICMFLVYWRI MREASKQALR 240
  241 LRQSVVYNTD EATTMRNLLL HPDWKSVQIV VFIMGCFTLC WLPYFCVAIA QLFSICQSSS 300
  301 MIYKTTFSLA IANSALNPII YSWKNSGFRR AFVQTLCCRT ARQCEDQLPA DSKHRMEATS 360
  361 SSQEIKPKAT Q

Type	Start	End	Confidence
Non-Cytoplasmic	1	50	0.90
Transmembrane Helix	51	75	0.88
Cytoplasmic	76	84	0.89
Transmembrane Helix	85	108	0.89
Non-Cytoplasmic	109	123	0.92
Transmembrane Helix	124	146	0.92
Cytoplasmic	147	165	0.91
Transmembrane Helix	166	188	0.92
Non-Cytoplasmic	189	206	0.92
Transmembrane Helix	207	228	0.94
Cytoplasmic	229	268	0.93
Transmembrane Helix	269	292	0.88
Non-Cytoplasmic	293	301	0.83
Transmembrane Helix	302	321	0.76
Cytoplasmic	322	371	0.78