YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4542-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	100	0.54
Transmembrane Helix	101	117	0.42
Non-Cytoplasmic	118	126	0.41
Transmembrane Helix	127	147	0.84
Cytoplasmic	148	152	0.37
Transmembrane Helix	153	172	0.70
Non-Cytoplasmic	173	181	0.47
Transmembrane Helix	182	205	0.74
Cytoplasmic	206	209	0.64
Transmembrane Helix	210	236	0.78
Non-Cytoplasmic	237	300	0.82
Transmembrane Helix	301	323	0.87
Cytoplasmic	324	331	0.94
Transmembrane Helix	332	352	0.93
Non-Cytoplasmic	353	376	0.52
Transmembrane Helix	377	396	0.83
Cytoplasmic	397	402	0.34
Transmembrane Helix	403	421	0.58
Non-Cytoplasmic	422	429	0.53
Transmembrane Helix	430	452	0.83
Cytoplasmic	453	459	0.54
Transmembrane Helix	460	484	0.79
Non-Cytoplasmic	485	485	0.38
Transmembrane Helix	486	504	0.43
Cytoplasmic	505	511	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDLFWHLVG IATGLKILLI PAYHSTDFEV HRNWLAITHS LPLNQWYVDA TSEWTLDYPP  60
   61 FFAYFEWLLS QVAKYVDPRM LVVDNLNYES KATVYFQRLS VIVTDLVYVL GVRSCLGSLG 120
  121 LGRDTQQFFA ASMLLLLNVG LIFVDHIHFQ YNGLLFGILL LSIGSLIRQR FLWSAFAFAV 180
  181 LLNFKHIFLY MAPAFGVYLL RFYCLEQASV VSAVGAVVKL LVVGLTPFAV SFGPFWQQLP 240
  241 QVLSRLFPFK RGLTHAYWAP NFWALYNAAD KLAAGVLKVQ DGGASTTSGL VQEVRHSVLP 300
  301 AITPPVTFAL TALFMLPILV KLFRSAKKQS PLVFLRAVVL CGCSSFVFGW HVHEKAILMV 360
  361 LLPLCLLTLV NREDARYAYV LGIAGYFSLF PLLFDADLYI PRYSLYMSYV AMMYGQLYRI 420
  421 FPGFRGFHTL EWLYMLGFMA IPLYEHLLSF LLHLDQRLPF LPLLLTSVYS ALGVLYFFGA 480
  481 YYLYALGISW GKVPIASSTS AAAVKRKRKT K