YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	shf-PA
Protein type:	Transmembrane
Type Confidence:	0.44
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHQGIGCLV KWLYLVLIVH TLLCIGQLEC RQQHHNRNNN NNNRRADSSS SEEGHGNTSD  60
   61 GLDNFADQDA SFVGHGHQPR RGQRKKQQGG GGGGSGGGGG NGGGGGSRHN RNEESGISLW 120
  121 INEQQLKMLT ALYFPQGYSE RLYAIHNSRV TNDLRDTTLY NFLVIPSEVN YVNFTWKSGR 180
  181 RKYFYDFDRL QTMDESILKA PTLSIRKSGR IPQEQKNFSI FLPCTGNSSG TASFNVGLKI 240
  241 QTRHNKPLSG TPIRLNFKKE CAHRGVYDID ASNPTSLTTL QECSLKCGKN GYCNEHHICK 300
  301 CNVGYTGQYC ETAFCFPQCL NGGNCTAPSV CTCPEGYQGT QCEGGICKDK CLNGGKCIQK 360
  361 DKCQCSKGYY GLRCEYSKCV IPCKNEGRCI GNNLCRCPNG LRGDHCEIGR KQRSICKCRN 420
  421 GTCVSHKHCK CHPGFYGRHC NGRKRRHVHR NDDSKF

Type	Start	End	Confidence
Cytoplasmic	1	7	0.41
Transmembrane Helix	8	27	0.40
Non-Cytoplasmic	28	456	0.98