YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG3774-PB, CG3774-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.93
Transmembrane Helix	8	29	0.94
Non-Cytoplasmic	30	38	0.78
Transmembrane Helix	39	59	0.93
Cytoplasmic	60	69	0.79
Transmembrane Helix	70	88	0.97
Non-Cytoplasmic	89	96	0.80
Transmembrane Helix	97	116	0.96
Cytoplasmic	117	124	0.87
Transmembrane Helix	125	144	0.94
Non-Cytoplasmic	145	162	0.94
Transmembrane Helix	163	186	0.91
Cytoplasmic	187	201	0.95
Transmembrane Helix	202	226	0.86
Non-Cytoplasmic	227	248	0.79
Transmembrane Helix	249	271	0.85
Cytoplasmic	272	277	0.65
Transmembrane Helix	278	299	0.78
Non-Cytoplasmic	300	306	0.78
Transmembrane Helix	307	328	0.90
Cytoplasmic	329	352	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALNLKALLG MLFVFIGCCS NVVFLELIIQ IDPGAGNLIT FAQFLFIALE GLVFTSKFFT  60
   61 VRPKIALKDY VILVALFFGA NVCNNYAFNF NIPMPLHMIF RSGSLMANMI MGIVLLKKRY 120
  121 NLRQYSSVAM ITAGIILCTL VSSGDVKDNT HHSLKVDTSY SDFFWWTVGI GLLTIALLVT 180
  181 AYMGIYQEVI YKKYGKHPSE ALFFTHMLPL PGFLIMAGNI VQHFGIAWSS EPVAVPLLGA 240
  241 IGLEWKFPLM LFYLLCNVVT QYVCISAVYV LTTECASLTV TLVVTLRKFV SLLFSIIYFR 300
  301 NPFTLNHWVG TILVFFGTIL FANVINQVRD AYRARSSRKT HFDTAPLAKK VE