YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG32750-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.59
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVFLRRFLW LISFTLVLTD DNSVENKFYI AGVVEYRPTF MGGTSEQLLQ ANLAGYLEIM  60
   61 ASGNGTTDII VFPEATLNSV ITLTAVPKFT EQSLCEEQGD DDPEIAPFLR SLACAAREYG 120
  121 TYLVVNVKER VSEQCTSDET CSSRGYSIHN TNVVFDRQGA VISRYRKWNL YLEPSTNRTE 180
  181 SPEIATFTTD FNVTFGHFIC FDMLFYTPAQ DLVEQLGIRH VIVTKMFNSE LPFLTASQFQ 240
  241 QGWAWANRVN LLASGGSLPQ GGISGSGIYA GQQGALARLM ITDELVGQRK LLLAKVPLDP 300
  301 EEPIATDEIL EPEIMTPVKL KLLQQPELKN FTTWELPMVR GSSVDKRICQ EDLCCEFRVT 360
  361 WTLEDTQPEY NYRLGVWVGQ RRYEEEQYSA IRLCGLFACK GASVESCGLV SEEEVHLQDH 420
  421 RVVFTDLQIL GEFVRRPRRL ILPSTLSSSS FYALQPSQLA WSMEELANVT RIKMELRQPH 480
  481 SQLMTFAIYG NYFDEYANGG AGRLGTLLFL LITPLIMMHL FRE

Type	Start	End	Confidence
Signal Peptide	1	19	0.90
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	499	0.92
Transmembrane Helix	500	521	0.61
Cytoplasmic	522	523	0.58