YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAAT1-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.92
Transmembrane Helix	43	64	0.84
Non-Cytoplasmic	65	72	0.74
Transmembrane Helix	73	93	0.90
Cytoplasmic	94	111	0.83
Transmembrane Helix	112	137	0.78
Non-Cytoplasmic	138	232	0.91
Transmembrane Helix	233	252	0.91
Cytoplasmic	253	258	0.88
Transmembrane Helix	259	280	0.93
Non-Cytoplasmic	281	306	0.92
Transmembrane Helix	307	328	0.90
Cytoplasmic	329	340	0.83
Transmembrane Helix	341	362	0.89
Non-Cytoplasmic	363	404	0.90
Transmembrane Helix	405	426	0.90
Cytoplasmic	427	437	0.81
Transmembrane Helix	438	460	0.87
Non-Cytoplasmic	461	471	0.82
Transmembrane Helix	472	494	0.91
Cytoplasmic	495	512	0.91
Transmembrane Helix	513	534	0.92
Non-Cytoplasmic	535	551	0.91
Transmembrane Helix	552	573	0.93
Cytoplasmic	574	641	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELKGVQPSN GSSNGSGNGA TNAASTEKTD AEKPTAERTN WGNGLEFLMS CISVSVGLGN  60
   61 VWRFPFTAYE NGGGAFLIPY IIVLFLIGKP MYYLEMIMGQ FTSQGTVKIW SVVPGFVGVG 120
  121 YGQAFGTICI ISYYSSLLAL TLYYLFVSFQ SELPWSYCRD EWTNCVNSRP QEYVDNLLTG 180
  181 VSLANESARN LSGIVANDET EKLQSSSELY FLNVVIKEKL DISDGVGDPD WKLTLALFVA 240
  241 WVVIFLVIMR GVKSSGKAAY FLALFPYVVL FVLLIRAVTL EGARDGILFF LEPQWGELLN 300
  301 PTVWKEAVVQ CFFSLAVGSG PIIMFASYNR FDHGIYRDAM IVTTLDTLTS LLGGITIFAI 360
  361 LGNLAHNLQI ENIRDVVRSG TGLAFISYPD AISKFQAVPQ LFSVLFFFML FVLGIGSIVA 420
  421 LQSTIVTIIC DQFKGWKYWK VALTTSVCGF LMGLVYVTPG GQWILTLVDF YGGTYVVFIL 480
  481 AIFELAGIVW VYGLQNFCDD IEFMCNRRVS LYWRVCWSFF TPVMMIIIFI YSMVTIEPIK 540
  541 YSELYFPEAA NIAGWLLFAI GAAQFPLWGL WYISRHPQGT YWKSLKASLK PSDRWGPANP 600
  601 EIRREWVIFK NQKAAQRATQ KDTSKLGFFW RKVANFCGSN K