YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24639774, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPDQPMSMQ NGAPPPPPSQ LTAHTIAAST VTAAPPTGSM AAPTALHYNT GMGGGIPPTS  60
   61 SAGGTAGNYV SIGILPSMSP AQLPPLLLPA PPPATTTFKT TPLLPMPTLE DIEVANQTGG 120
  121 QSGQVVVSLA QTSMAPPGIL KYPTAGGYVS DMMAPPPSLP LSMSLPHPPL TSIAGSTAGS 180
  181 NNSNISGSNM SSNSNCGTLK SNAKLLPLQL MATPPSRKEP LTPAHPQAAS IQAQAQVQHQ 240
  241 LQQQHQQQQQ QQQQQHQQQQ QQQQQRQRKR QGWCSCFSST PGGGHAGGGV GGGVAAGETG 300
  301 KTPPGYGSKE KKKSRKATSQ TVWSALLTNL GICMLLLAYT LLGKR

Type	Start	End	Confidence
Cytoplasmic	1	320	0.52
Transmembrane Helix	321	343	0.89
Non-Cytoplasmic	344	345	0.49