YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0311480, Pro...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMSSTSTAT ATSTATATLD EANATVGEMF SDADMAEVRH VVQRILVPCV FVIGLLGNSV  60
   61 SIYVLTRKRM RCTTNIYLTA LAITDIAYLT CQLILSLQHY DYPKYHFKLY WQLYGYFVWL 120
  121 CDSFGYISIY IAVCFTIERF IAIRYPLKRQ TFCTESLAKK VIAAVAIFCL LSTLSTAFEH 180
  181 TITIGTRQID DAYQPCNQTV ANISPMPPPP VAVTPPLATP PLPTPATIWQ SPDSAMESTT 240
  241 SGSSNQLVDW GSGSGDGEPE NIPRHRRHWQ SSGFVTLPTL RKTLEEQDQK VADAAQRSGV 300
  301 TESLLQLWRR KRSAENHNIN NTDAFAFNVT EYCQNVTYYN HGLSELGYDE LYSYLWNLFT 360
  361 LLVFVVFPLL LLATFNSILI LLVHRSKNLR GDLTNASSIR RTKRKSNSGL KGSVSQENRV 420
  421 TITLIAVVLM FIVCQLPWAI YLIVNQYMEI QIGTQVVAGN VCNLLASLHA ASNFFLYCVL 480
  481 SDKYRKTVRE LITGYRYRRR HARNNTSLYV PHTTTTLTQI NGDHYGSNYG GAGSRRNRNT 540
  541 GRLIA

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.69
Transmembrane Helix	44	65	0.85
Cytoplasmic	66	75	0.83
Transmembrane Helix	76	96	0.94
Non-Cytoplasmic	97	115	0.90
Transmembrane Helix	116	137	0.90
Cytoplasmic	138	156	0.88
Transmembrane Helix	157	178	0.89
Non-Cytoplasmic	179	357	0.97
Transmembrane Helix	358	383	0.85
Cytoplasmic	384	419	0.98
Transmembrane Helix	420	442	0.92
Non-Cytoplasmic	443	455	0.88
Transmembrane Helix	456	479	0.79
Cytoplasmic	480	545	0.88