YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG2930-PD
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	141	0.72
Transmembrane Helix	142	159	0.64
Non-Cytoplasmic	160	165	0.82
Transmembrane Helix	166	186	0.93
Cytoplasmic	187	195	0.78
Transmembrane Helix	196	216	0.95
Non-Cytoplasmic	217	224	0.74
Transmembrane Helix	225	245	0.91
Cytoplasmic	246	263	0.80
Transmembrane Helix	264	285	0.89
Non-Cytoplasmic	286	298	0.88
Transmembrane Helix	299	320	0.91
Cytoplasmic	321	377	0.94
Transmembrane Helix	378	396	0.93
Non-Cytoplasmic	397	425	0.92
Transmembrane Helix	426	447	0.85
Cytoplasmic	448	458	0.80
Transmembrane Helix	459	480	0.86
Non-Cytoplasmic	481	685	0.88
Transmembrane Helix	686	706	0.75
Cytoplasmic	707	720	0.53
Transmembrane Helix	721	744	0.86
Non-Cytoplasmic	745	751	0.56
Transmembrane Helix	752	773	0.93
Cytoplasmic	774	803	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDKKNEIQP AAEPVAEPEP SPAAEIAPAS PDGSGPSAAA AEEVTPSVAT VEDTTPIAAP  60
   61 AESQPSGESN GTAEAKKLPE IAKKNGKEPD QNDKEPDQNG KELAETNDFK NVSETEGQQK 120
  121 KLPYPKSVFF IISNEFCERF NYYGMRTVLV LYLSRVLGYS DDTATVVFHI FTMFVYFLCV 180
  181 FGAIISDSWL GKFKTILYLS LVYICGSVLL TLGAIGPLNL PMETFTMLGL ALIALGSGGI 240
  241 KPCVSAFGGD QFKVPEQVKQ ITSFFSLFYF SINAGSLIST TVTPILREDV SCFDDINCYP 300
  301 LAFGVPAVLM IVSVIIFVLG RSLYKMKPPA GNMVVLVSST IWTALTTKCK EKKTNPREHW 360
  361 LDYADKKYDR QLIDDVKVLM RVLFLYLPLP VFWALFDQQG SRWTFQATRM DGDMGSWDIK 420
  421 PDQLQVLNPL LILIFIPLYD VALYPALKLV GIRRPLQKLT MGGILAGIAF IISGVVELSL 480
  481 EHTYPLIPSS GNTQLRVFSG IPDCDYRFST NLGARESFTL RGLDFYYSGS VATNTDGIFQ 540
  541 LTYTVESLTE GCAILEGGTQ QLYEATAHSL FLRPSHAITK FWYEDEVQKS NRSWAFVRNL 600
  601 ANLLATTRVV WREDSGDTVA LDLPARNHDL YELSTGGYNV QVADHNLTSI ELRAGGVYAL 660
  661 LIGQSHGTFV SRIIEVTSPN SMHMLWLVPQ YVVMTLGEVM FSVTGLEFSY SQSPPSMKSV 720
  721 LQACWLLTVA FGNVIVVVVA ELKFFDSQAS EFFLFAGLMF VDMLVFMFVA YYYKPYDEVA 780
  781 ALAERVRARR ERKWQDLDRF KRD