YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AlstR-PB, FBpp03...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.96
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	78	0.97
Transmembrane Helix	79	101	0.93
Cytoplasmic	102	110	0.90
Transmembrane Helix	111	132	0.95
Non-Cytoplasmic	133	148	0.92
Transmembrane Helix	149	170	0.90
Cytoplasmic	171	190	0.88
Transmembrane Helix	191	212	0.93
Non-Cytoplasmic	213	246	0.92
Transmembrane Helix	247	270	0.86
Cytoplasmic	271	288	0.98
Transmembrane Helix	289	312	0.89
Non-Cytoplasmic	313	326	0.86
Transmembrane Helix	327	350	0.85
Cytoplasmic	351	394	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGHQSLALL LATLISSWPK ASWGATGNGS IISVSNSSGN NYAFTSEHTD HSDHNANDSM  60
   61 EYDAESVALE RIVSTIVPVF FGIIGFAGLL GNGLVILVVV ANQQMRSTTN LLIINLAVSD 120
  121 ILFVIFCVPF TATDYVLPEW PFGNVWCKFV QYMIVVTCHC SVYTLVLMSF DRFLAVVHPV 180
  181 TSMSLRTERN ATLAIMCAWI TIVTTAIPVA LSHSVRIYQY HGNAGTACVF STEEEIWSLV 240
  241 GFQVSFFLSS YVAPLTLICF LYMGMLARLW KSAPGCKPSA ESRKGKRRVT RMVVVVVLAF 300
  301 AICWLPIHVI LVLKALNLYG GSHLSVIIQI ISHVVAYTNS CINPILYAFL SDNFRKAFRK 360
  361 VVWCGSPPPL MTNQQVTKTT RTATGNGTSN IEML