YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0310504, CG1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	60	0.98
Transmembrane Helix	61	82	0.89
Non-Cytoplasmic	83	91	0.81
Transmembrane Helix	92	112	0.93
Cytoplasmic	113	130	0.86
Transmembrane Helix	131	154	0.81
Non-Cytoplasmic	155	219	0.92
Transmembrane Helix	220	241	0.88
Cytoplasmic	242	246	0.85
Transmembrane Helix	247	269	0.87
Non-Cytoplasmic	270	295	0.89
Transmembrane Helix	296	317	0.89
Cytoplasmic	318	328	0.81
Transmembrane Helix	329	350	0.91
Non-Cytoplasmic	351	409	0.92
Transmembrane Helix	410	433	0.81
Cytoplasmic	434	452	0.91
Transmembrane Helix	453	477	0.89
Non-Cytoplasmic	478	484	0.89
Transmembrane Helix	485	507	0.92
Cytoplasmic	508	527	0.95
Transmembrane Helix	528	550	0.95
Non-Cytoplasmic	551	570	0.97
Transmembrane Helix	571	593	0.88
Cytoplasmic	594	662	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDAFDESSE LEQDPPPFGS EASTSKAKAE LVAIATASAD QQDIVEGEKE GEERESWDSK  60
   61 IMFLLATIGY AVGLGNVWRF PYLAQKNGGG AFLVPYFIML CIQGIPIFYL ELAIGQRLRK 120
  121 GAIGVWSQVS PYLGGIGISS AVVSYIVALY YNTIIAWCLI YLLHSFESPL PWADCPTRLY 180
  181 KNFTYDHEPE CVASSPTQFY WYRTTLQCSE SVDMPENFNY HMAIALIVSW FLVYICMVQG 240
  241 ITSSGKIVYM TAIFPYVVLI IFFFRGITLK GAADGVAHLF TPRWETLLDP VVWLEAGTQI 300
  301 FFSLGLAFGG LIAFSSYNPA NNNCYRDAIL VSLTNCGTSM FAGVVVFSVI GFKATATFDR 360
  361 CTEERNGLVA QNKTHNLPVC DLQTELANSA SGTGLAFIIF TEAINQFPGA QLWAVLFFLM 420
  421 LFTLGIDSQF GTLEGVVTSL VDMKLFPNLP KEYIVGALCF SCCTISMCFA NGAGSYIFQL 480
  481 MDSFAGNFPL LIIALFECLS ISYIYGVRRF SDDIEMMTGS RPNFYWMFCW KYLSPCAMVT 540
  541 ILLASFYQLL TEGSSYPAWI GSKGATEGME WPHWCIVVAF FLILSSILWI PIVAVLRLCG 600
  601 IKVVEDSDPA WFPEAELREV HGIVPHEPTE LERSIFCFNM DGTEGMCCPK YGLPEKSLEE 660
  661 EE