YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG10804-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	60	0.97
Transmembrane Helix	61	82	0.89
Non-Cytoplasmic	83	90	0.84
Transmembrane Helix	91	112	0.91
Cytoplasmic	113	128	0.83
Transmembrane Helix	129	163	0.70
Non-Cytoplasmic	164	219	0.75
Transmembrane Helix	220	241	0.88
Cytoplasmic	242	246	0.66
Transmembrane Helix	247	269	0.86
Non-Cytoplasmic	270	295	0.67
Transmembrane Helix	296	317	0.85
Cytoplasmic	318	328	0.62
Transmembrane Helix	329	350	0.74
Non-Cytoplasmic	351	429	0.46
Transmembrane Helix	430	453	0.80
Cytoplasmic	454	472	0.80
Transmembrane Helix	473	494	0.87
Non-Cytoplasmic	495	504	0.76
Transmembrane Helix	505	527	0.91
Cytoplasmic	528	547	0.94
Transmembrane Helix	548	570	0.95
Non-Cytoplasmic	571	590	0.95
Transmembrane Helix	591	613	0.88
Cytoplasmic	614	682	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDAFDESSE LEQDPPPFGS EASTSKAKAE LVAIATASAD QQDIVEGEKE GEERESWDSK  60
   61 IMFLLATIGY AVGLGNVWRF PYLAQKNGGG AFLVPYFIML CIQGIPIFYL ELAIGQRLRK 120
  121 GAIGVWSQVS PYLGGIGISS AVVSYIVALY YNTIIAWCLI YLLHSFESPL PWADCPTRLY 180
  181 KNFTYDHEPE CVASSPTQFY WYRTTLQCSE SVDMPENFNY HMAIALIVSW FLVYICMVQG 240
  241 ITSSGKIVYM TAIFPYVVLI IFFFRGITLK GAADGVAHLF TPRWETLLDP VVWLEAGTQI 300
  301 FFSLGLAFGG LIAFSSYNPA NNNCYRDAIL VSLTNCGTSM FAGVVVFSVI GFKATATFDR 360
  361 CTEERNGLVA QNKTHNLPVC DLQTELANVS SLAICLHGIY TYIYLPFQSA SGTGLAFIIF 420
  421 TEAINQFPGA QLWAVLFFLM LFTLGIDSQF GTLEGVVTSL VDMKLFPNLP KEYIVGALCF 480
  481 SCCTISMCFA NGAGSYIFQL MDSFAGNFPL LIIALFECLS ISYIYGVRRF SDDIEMMTGS 540
  541 RPNFYWMFCW KYLSPCAMVT ILLASFYQLL TEGSSYPAWI GSKGATEGME WPHWCIVVAF 600
  601 FLILSSILWI PIVAVLRLCG IKVVEDSDPA WFPEAELREV HGIVPHEPTE LERSIFCFNM 660
  661 DGTEGMCCPK YGLPEKSLEE EE