YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ttm50-PA
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMSMAPATV LQLLRGLSTP RLLTHIHQHR ALGNHYHHYH QHYQHQHHLL HHQQQYLRLF  60
   61 TCTALPAAAP ALFSILHTAR GYSSTTKQEA GATGPNDAPE VAPNAPLLAK LFPQTSPEVD 120
  121 SNAEQERKKR EEEEEKENER AWKRMKLGFA IFGGSAVAAG FWAVYEFGKP EVDPNGQPIE 180
  181 DEFTHKPLVQ QYLQRMWKSI HYYQRMIQEP SRAKLLPDPL KPPYVQPRYT LVLEMKDVLV 240
  241 HPDWTYQTGW RFKKRPGVDH FLAECAKDFE IVVFTAEQGM TVFPILDALD PNGYIMYRLV 300
  301 RDATHFVDGH HVKNLDNLNR DLKKVIVVDW DANATKMHPD NTFGLARWHG NDDDGQLLDL 360
  361 IAFLKIIAQN NVDDVREVLH YYRQFDDPIN QFRENQRKLA EQMLEAERIE QSKTKPMVKQ 420
  421 WSRNILGR

Type	Start	End	Confidence
Cytoplasmic	1	146	0.67
Transmembrane Helix	147	165	0.80
Non-Cytoplasmic	166	428	0.99