YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or2a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKQEDFKLN THSAVYYHWR VWELTGLMRP PGVSSLLYVV YSITVNLVVT VLFPLSLLAR  60
   61 LLFTTNMAGL CENLTITITD IVANLKFANV YMVRKQLHEI RSLLRLMDAR ARLVGDPEEI 120
  121 SALRKEVNIA QGTFRTFASI FVFGTTLSCV RVVVRPDREL LYPAWFGVDW MHSTRNYVLI 180
  181 NIYQLFGLIV QAIQNCASDS YPPAFLCLLT GHMRALELRV RRIGCRTEKS NKGQTYEAWR 240
  241 EEVYQELIEC IRDLARVHRL REIIQRVLSV PCMAQFVCSA AVQCTVAMHF LYVADDHDHT 300
  301 AMIISIVFFS AVTLEVFVIC YFGDRMRTQS EALCDAFYDC NWIEQLPKFK RELLFTLART 360
  361 QRPSLIYAGN YIALSLETFE QVMRFTYSVF TLLLRAK

Type	Start	End	Confidence
Cytoplasmic	1	36	0.65
Transmembrane Helix	37	59	0.88
Non-Cytoplasmic	60	132	0.53
Transmembrane Helix	133	154	0.63
Cytoplasmic	155	266	0.81
Transmembrane Helix	267	291	0.87
Non-Cytoplasmic	292	299	0.85
Transmembrane Helix	300	322	0.93
Cytoplasmic	323	397	0.96